Some References in Computational Molecular Evolution

Avise, J. C. 1994. Molecular Markers, Natural History and Evolution. Chapman and Hall. New York.

Baxevanis, A. D. and B. F. F. Ouellette. 1998. Bioinformatics. A Practical Guide to the Analysis of Genes and Proteins. Wiley-Interscience. New York.

Bishop, M. J. and C. J. Rawlings, eds. 1997. DNA and Protein Sequence Analysis. IRL Press, Oxford.

Clote, P. and R. Backofen. 2000. Computational Molecular Biology. John Wiley & Sons, New York.

Doolittle R., ed. 1990. Molecular Evolution: Computer Analysis of Protein and Nucleic Acid Sequences. Methods in Enzymology, Volume 83. Academic Press.

Doolittle R., ed. 1996. Computer Methods for Macromolecular Sequence Analysis. Methods in Enzymology, Volume 266. Academic

Durbin, R., S. Eddy, A. Krogh and G. Mitchison. 1998. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge, England.

Felsenstein, J. 1988. Phylogenies from molecular sequences: Inference and reliability. Annual Review of Genetics 22:521--565.

Graur, D. and W.-H. Li. 2000. Fundamentals of Molecular Evolution. Sinauer Associates, Sunderland, MA.

Gribskov, M. and J. Devereux, eds. 1991. Sequence Analysis Primer. Stockton Press, New York.

Griffin, A. M. and H. G. Griffin, eds. 1994. Computer Analysis of Sequence Data, Parts I and II. Humana Press, Totowa, NJ.

Hall, B. G. 2001. Phylogenetic Trees Made Easy. Sinauer Associates, Sunderland, MA.

Hein, J., M. H. Schierup and C. Wiuf. 2005. Gene Genealogies, Variation and Evolution. Oxford University Press, Oxford, England

Hillis, D. M, C. Moritz and B. K. Mable. Eds. 1996. Molecular Systematics. Sinauer Associates, Sunderland, MA.

Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.

Kitching, I. J., P. L. Forey, C. J. Humphries and D. M. Williams. Cladistics. The theory and practice of parsimony analysis. Oxford Science Publ., Oxford, England.

Li, W.-H. 1997. Molecular Evolution. Sinauer Associates, Sunderland, MA.

Li, W.-H. and D. Graur. 1991. Fundamentals of Molecular Evolution. Sinauer Associates, Sunderland, Mass.

Miyamoto, M. M. and J. Cracraft. 1991. Phylogenetic Analysis of DNA Sequences. Oxford University Press, New York.

Mount, D. W. 2001. Bioinformatics: Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, Woodbury, NY.

Nei, M and S. Kumar. 2000. Molecular Evolution and Phylogenetics. Oxford University Press, Oxford, England.

Nei, M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.

Nei, M. 1996. Phylogenetic analysis in molecular evolutionary genetics. Annual Review of Genetics 30:371-403.

Page, R. D. M. and E. C. Holmes. 1998. Molecular Evolution. A Phylogenetic Approach. Blackwell Science, Oxford, England.

Salemi, M. and A-M Vandamme. 2003. The Phylogenetic Handbook. Cambridge University Press., Cambridge England

Setubal, J. and J. Meidanis. 1997. Introduction to Computational Molecular Biology. PWS Publishing, Boston MA.

Swofford, D.L, G.J. Olsen, P.J. Waddell, and D.M. Hillis. 1996. Phylogenetic Inference. Pp. 407--514 in D.M. Hillis, C. Moritz, B.K. Mable, eds. Molecular Systematics. Second Edition. Sinauer Associates, Sunderland, Mass.

Waterman, M. 1995. Introduction to Computational Biology. Chapman and Hall, London.

Weir, B.S. 1996. Genetic Data Analysis II. Sinauer Associates, Sunderland, Mass.